PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf01063g05008.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family WOX
Protein Properties Length: 311aa    MW: 35504.9 Da    PI: 6.9616
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf01063g05008.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85.1e-2045106257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                  Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                               ++R+t+t++q+++L++l+++   r p+ae+++++++kl    +++ ++V++WFqN++a+e++
  Peinf101Scf01063g05008.1  45 STRWTPTTDQIRILKDLYYNngVRSPTAEQIQRISAKLrqygKIEGKNVFYWFQNHKARERQ 106
                               58*****************8678*************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-728106IPR009057Homeodomain-like
SuperFamilySSF466891.2E-1131108IPR009057Homeodomain-like
PROSITE profilePS5007110.52741107IPR001356Homeobox domain
SMARTSM003894.9E-643111IPR001356Homeobox domain
PfamPF000462.4E-1746106IPR001356Homeobox domain
CDDcd000867.34E-746108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
METAQHQQNN QQHYLHQHLS IGQGTNIEDG SNKNNSSSFM CRQSSTRWTP TTDQIRILKD  60
LYYNNGVRSP TAEQIQRISA KLRQYGKIEG KNVFYWFQNH KARERQKKRL IAAATTDNTN  120
LPMQMQLQRG VWRSSADDPI HHKYTNPGAH CPSASSHGVL AVGQNGNHGY GALAMEKSFR  180
WLSKQDCSIS PGSSMSHHHQ NFAWAGVDPY SSTTTYPFLE KTKHFENETL EADEEQQEED  240
QENYYYQRTT SAIETLPLFP MHEENISSFC NLKHQESSGG FYTEWYRADD NLAAARASLE  300
LSLNSFIGNS S
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4819510.0AF481951.1 Petunia x hybrida wuschel protein (WUS) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792214.11e-160PREDICTED: protein WUSCHEL
RefseqXP_016474994.11e-160PREDICTED: protein WUSCHEL-like
SwissprotQ8LL110.0WUS_PETHY; Protein WUSCHEL
TrEMBLF6LIE31e-111F6LIE3_SOLLC; Uncharacterized protein
STRINGSolyc02g083950.2.11e-111(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76042331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-43WOX family protein